repo - A Data-Centered Data Flow Manager
A data manager meant to avoid manual storage/retrieval of data to/from the file system. It builds one (or more) centralized repository where R objects are stored with rich annotations, including corresponding code chunks, and easily searched and retrieved. See Napolitano (2017) <doi:10.1186/s12859-017-1510-6> for further information.
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7.39 score 19 stars 1 dependents 145 scripts 340 downloadsgep2pep - Creation and Analysis of Pathway Expression Profiles (PEPs)
Pathway Expression Profiles (PEPs) are based on the expression of pathways (defined as sets of genes) as opposed to individual genes. This package converts gene expression profiles to PEPs and performs enrichment analysis of both pathways and experimental conditions, such as "drug set enrichment analysis" and "gene2drug" drug discovery analysis respectively.
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geneexpressiondifferentialexpressiongenesetenrichmentdimensionreductionpathwaysgo
4.52 score 11 scripts 398 downloads