repo - A Data-Centered Data Flow Manager
A data manager meant to avoid manual storage/retrieval of data to/from the file system. It builds one (or more) centralized repository where R objects are stored with rich annotations, including corresponding code chunks, and easily searched and retrieved. See Napolitano (2017) <doi:10.1186/s12859-017-1510-6> for further information.
Last updated 4 years ago
6.53 score 20 stars 1 dependents 56 scripts 354 downloadsgep2pep - Creation and Analysis of Pathway Expression Profiles (PEPs)
Pathway Expression Profiles (PEPs) are based on the expression of pathways (defined as sets of genes) as opposed to individual genes. This package converts gene expression profiles to PEPs and performs enrichment analysis of both pathways and experimental conditions, such as "drug set enrichment analysis" and "gene2drug" drug discovery analysis respectively.
Last updated 4 months ago
geneexpressiondifferentialexpressiongenesetenrichmentdimensionreductionpathwaysgo
4.48 score 4 scripts 228 downloads